#!/bin/bash
../mesord_smeagol101 -K -g -x 0 -c 1 -t 50 -i 1 -I 50 -w 0.0037 -q 0.020 um -c 1 Ecoli_1state_D100.xml

# the above takes ~30 s on nimloth

# discretization numbers:

# few boundary collisions: sqrt(2*1um^2/s*3.7ms) ~ 86 nm < radius 400 nm
#
# several jumps btw readouts: 
# diffusive jump sqrt(2*1um^2/s*3.7ms) ~ 86 nm >> 20 nm lattice 
# (6*1um^2/s*3.7ms)/(20 nm)^2 = 55 jumps/time-step >>1

